I've noticed recently some issues when trying to "Deploy" updated group policy objects using AGPM. AGPM will respond with Event 2006
Restore of GPO failed. Error [The directory is not empty]
On the domain controller in the DFS event log you see an entry like this:
The DFS Replication service detected that a file was changed on multiple servers. A conflict resolution algorithm was used to determine the winning file. The losing file was moved to the Conflict and Deleted folder.
This only seemed to start once we switched SYSVOL replication from FRS to DFS. Has anyone else seen this issue?